Area under disease progress curve

Calculates the area under disease progress curves.

AUDPC(time, y, y_proportion = TRUE, type = "absolute")

Arguments

time

A vector object of time.
y

A vector object of disease intensity.
y_proportion

Logical. If disease intensity is proportion (TRUE) or percentage(FALSE).
type

Set if is absolute or relative AUDPC. type = "absolute" is default.

References

Madden, L. V., Hughes, G., and van den Bosch, F. 2007. The Study of Plant Disease Epidemics. American Phytopathological Society, St. Paul, MN.

Author

Kaique dos S. Alves

Examples

epi =  sim_logistic(N = 30, y0 = 0.01,dt = 5, r = 0.3, alpha = 0.5, n = 1)
AUDPC(time = epi$time, y = epi$y, y_proportion = TRUE)

#> [1] 14.69147